HL_9SUM_062

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9SUM|1|A|A|3135, 9SUM|1|A|A|3136, 9SUM|1|A|G|3138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9SUM|1|A|C|3132
9SUM|1|A|G|3133
9SUM|1|A|G|3134
9SUM|1|A|A|3135
9SUM|1|A|A|3136
9SUM|1|A|A|3137
9SUM|1|A|G|3138
9SUM|1|A|G|3139

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

60S ribosomal protein L16-B