HL_9SUM_070

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

9SUM|1|C|A|107, 9SUM|1|C|U|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9SUM|1|C|C|104
9SUM|1|C|A|105
9SUM|1|C|C|106
9SUM|1|C|A|107
9SUM|1|C|U|108
9SUM|1|C|U|109
9SUM|1|C|G|110

Current chains

Chain C

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Z

Large ribosomal subunit protein uL23

Chain l

Ribosomal protein L37

Chain n

Large ribosomal subunit protein eL39