HL_9SUM_087

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SUM|1|CA|A|870
9SUM|1|CA|G|871
9SUM|1|CA|G|872
9SUM|1|CA|U|873
9SUM|1|CA|G|874
9SUM|1|CA|A|875
9SUM|1|CA|A|876
9SUM|1|CA|A|877
9SUM|1|CA|U|878
9SUM|1|CA|U|879

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZF

Small ribosomal subunit protein uS11

Chain ZS

40S ribosomal protein S26

Chain x

40S ribosomal protein uS7 (formerly S5)