HL_9SUM_099

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GUCACCAAC

Length

9 nucleotides

Bulged bases

9SUM|1|CA|C|1571, 9SUM|1|CA|A|1576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9SUM|1|CA|G|1569
9SUM|1|CA|U|1570
9SUM|1|CA|C|1571
9SUM|1|CA|A|1572
9SUM|1|CA|C|1573
9SUM|1|CA|C|1574
9SUM|1|CA|A|1575
9SUM|1|CA|A|1576
9SUM|1|CA|C|1577

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZH

Small ribosomal subunit protein uS9

Chain ZJ

40S ribosomal protein S18

Chain ZK

40S ribosomal protein S19-A

Chain ZL

Small ribosomal subunit protein uS10

Chain ZV

Small ribosomal subunit protein uS14

Chain v

Small ribosomal subunit protein uS3