HL_9SYR_002

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

9SYR|1|L1|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_002 not in the Motif Atlas

Homologous match to HL_9PN5_002

Geometric discrepancy: 0.1084

The information below is about HL_9PN5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9SYR|1|L1|U|68
9SYR|1|L1|A|69
9SYR|1|L1|A|70
9SYR|1|L1|C|71
9SYR|1|L1|C|72
9SYR|1|L1|A|73

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L15

Chain LP

Large ribosomal subunit protein eL13

Chain Lr

60S ribosomal protein L27a

Chain Lz

60S ribosomal protein L36