HL_9SYR_012

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9SYR|1|L1|U|1179, 9SYR|1|L1|C|1180, 9SYR|1|L1|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_012 not in the Motif Atlas

Homologous match to HL_8GLP_014

Geometric discrepancy: 0.4741

The information below is about HL_8GLP_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9SYR|1|L1|G|1178
9SYR|1|L1|U|1179
9SYR|1|L1|C|1180
9SYR|1|L1|C|1181
9SYR|1|L1|C|1182
9SYR|1|L1|C|1183

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LM

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L5