HL_9SYR_025

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

9SYR|1|L1|C|2258, 9SYR|1|L1|G|2259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_025 not in the Motif Atlas

Homologous match to HL_8GLP_031

Geometric discrepancy: 0.3467

The information below is about HL_8GLP_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12111.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9SYR|1|L1|C|2257
9SYR|1|L1|C|2258
9SYR|1|L1|G|2259
9SYR|1|L1|C|2260
9SYR|1|L1|G|2261

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L28

Chain Le

Large ribosomal subunit protein eL6