HL_9SYR_044

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9SYR|1|L1|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_044 not in the Motif Atlas

Homologous match to HL_9H3G_052

Geometric discrepancy: 0.31

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.4

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9SYR|1|L1|G|3757
9SYR|1|L1|U|3758
9SYR|1|L1|A|3759
9SYR|1|L1|A|3760
9SYR|1|L1|C|3761
9SYR|1|L1|U|3762
9SYR|1|L1|A|3763
9SYR|1|L1|U|3764
9SYR|1|L1|G|3765
9SYR|1|L1|A|3766
9SYR|1|L1|C|3767

Current chains

Chain L1

28S rRNA

Nearby chains

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain S3

Transfer RNA; tRNA

Chain Sn

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein