HL_9SYR_049

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_049 not in the Motif Atlas

Homologous match to HL_8GLP_061

Geometric discrepancy: 0.3244

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9SYR|1|L1|G|4250
9SYR|1|L1|A|4251
9SYR|1|L1|C|4252
9SYR|1|L1|A|4253
9SYR|1|L1|G|4254
9SYR|1|L1|A|4255
9SYR|1|L1|A|4256
9SYR|1|L1|A|4257
9SYR|1|L1|C|4258

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein L11