HL_9SYR_055

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9SYR|1|L1|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_055 not in the Motif Atlas

Homologous match to HL_9PN5_060

Geometric discrepancy: 0.1045

The information below is about HL_9PN5_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9SYR|1|L1|A|4474
9SYR|1|L1|G|4475
9SYR|1|L1|C|4476
9SYR|1|L1|A|4477
9SYR|1|L1|G|4478
9SYR|1|L1|A|4479
9SYR|1|L1|A|4480
9SYR|1|L1|U|4481

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LD

Ubiquitin-60S ribosomal protein L40

Chain LK

60S ribosomal protein L9