HL_9SYR_095

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

9SYR|1|S1|C|1419, 9SYR|1|S1|G|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_095 not in the Motif Atlas

Geometric match to HL_2ZUE_002

Geometric discrepancy: 0.3448

The information below is about HL_2ZUE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56131.4

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

9SYR|1|S1|C|1417
9SYR|1|S1|C|1418
9SYR|1|S1|C|1419
9SYR|1|S1|G|1420
9SYR|1|S1|A|1421
9SYR|1|S1|G|1422

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Si

Small ribosomal subunit protein eS19