HL_9SYR_099

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9SYR|1|S1|A|1663, 9SYR|1|S1|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_099 not in the Motif Atlas

Homologous match to HL_9H3G_107

Geometric discrepancy: 0.2799

The information below is about HL_9H3G_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9SYR|1|S1|G|1658
9SYR|1|S1|U|1659
9SYR|1|S1|C|1660
9SYR|1|S1|A|1661
9SYR|1|S1|U|1662
9SYR|1|S1|A|1663
9SYR|1|S1|A|1664
9SYR|1|S1|G|1665
9SYR|1|S1|C|1666

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S16

Chain Si

Small ribosomal subunit protein eS19

Chain Sl

40S ribosomal protein S20

Chain Sp

40S ribosomal protein S29