HL_9T0Z_014

3D structure

PDB id

9T0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

HPFcold Bound Hibernating C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

9T0Z|1|A|U|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T0Z_014 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.2249

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9T0Z|1|A|G|614
9T0Z|1|A|C|615
9T0Z|1|A|U|616
9T0Z|1|A|U|617
9T0Z|1|A|A|618
9T0Z|1|A|A|619
9T0Z|1|A|C|620

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16