HL_9T4R_005

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCUUG

Length

5 nucleotides

Bulged bases

9T4R|1|A|C|219, 9T4R|1|A|U|221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_005 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1755

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9T4R|1|A|U|218
9T4R|1|A|C|219
9T4R|1|A|U|220
9T4R|1|A|U|221
9T4R|1|A|G|222

Current chains

Chain A

16S rRNA

Nearby chains