HL_9T4R_025

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9T4R|1|A|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.1939

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9T4R|1|A|G|1100
9T4R|1|A|U|1101
9T4R|1|A|U|1102
9T4R|1|A|A|1103
9T4R|1|A|A|1104
9T4R|1|A|G|1105
9T4R|1|A|U|1106
9T4R|1|A|C|1107

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS7