HL_9T4R_031

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUUUA

Length

5 nucleotides

Bulged bases

9T4R|1|A|U|1461, 9T4R|1|A|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_031 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1365

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9T4R|1|A|U|1460
9T4R|1|A|U|1461
9T4R|1|A|U|1462
9T4R|1|A|U|1463
9T4R|1|A|A|1464

Current chains

Chain A

16S rRNA

Nearby chains