HL_9T4R_047

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

9T4R|1|a|A|372, 9T4R|1|a|A|373, 9T4R|1|a|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_047 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3631

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9T4R|1|a|G|370
9T4R|1|a|U|371
9T4R|1|a|A|372
9T4R|1|a|A|373
9T4R|1|a|U|374
9T4R|1|a|A|375
9T4R|1|a|A|376
9T4R|1|a|U|377
9T4R|1|a|C|378

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24