HL_9T4R_049

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9T4R|1|a|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_049 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1096

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9T4R|1|a|G|456
9T4R|1|a|G|457
9T4R|1|a|A|458
9T4R|1|a|C|459
9T4R|1|a|C|460
9T4R|1|a|A|461
9T4R|1|a|U|462
9T4R|1|a|C|463

Current chains

Chain a

23S rRNA

Nearby chains