HL_9T4R_066

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_066 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.0912

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9T4R|1|a|G|1318
9T4R|1|a|U|1319
9T4R|1|a|G|1320
9T4R|1|a|A|1321
9T4R|1|a|G|1322
9T4R|1|a|A|1323
9T4R|1|a|A|1324
9T4R|1|a|U|1325
9T4R|1|a|C|1326

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32