HL_9T4R_083

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9T4R|1|a|U|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_083 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1017

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9T4R|1|a|G|1974
9T4R|1|a|G|1975
9T4R|1|a|U|1976
9T4R|1|a|A|1977
9T4R|1|a|A|1978
9T4R|1|a|G|1979
9T4R|1|a|U|1980
9T4R|1|a|U|1981
9T4R|1|a|C|1982

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain U

Large ribosomal subunit protein uL14