HL_9T4R_084
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9T4R|1|a|A|2055, 9T4R|1|a|A|2056, 9T4R|1|a|G|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T4R_084 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.1898
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9T4R|1|a|G|2052
9T4R|1|a|U|2053
9T4R|1|a|G|2054
9T4R|1|a|A|2055
9T4R|1|a|A|2056
9T4R|1|a|G|2057
9T4R|1|a|A|2058
9T4R|1|a|U|2059
9T4R|1|a|G|2060
9T4R|1|a|C|2061
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain q
- Large ribosomal subunit protein bL21
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: