HL_9T4R_088
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9T4R|1|a|A|2293, 9T4R|1|a|C|2300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T4R_088 not in the Motif Atlas
- Homologous match to HL_7A0S_053
- Geometric discrepancy: 0.1171
- The information below is about HL_7A0S_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9T4R|1|a|C|2289
9T4R|1|a|U|2290
9T4R|1|a|A|2291
9T4R|1|a|A|2292
9T4R|1|a|A|2293
9T4R|1|a|A|2294
9T4R|1|a|G|2295
9T4R|1|a|G|2296
9T4R|1|a|U|2297
9T4R|1|a|A|2298
9T4R|1|a|A|2299
9T4R|1|a|C|2300
9T4R|1|a|G|2301
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: