HL_9T4R_093

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9T4R|1|a|C|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_093 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1276

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9T4R|1|a|C|2429
9T4R|1|a|G|2430
9T4R|1|a|C|2431
9T4R|1|a|A|2432
9T4R|1|a|U|2433
9T4R|1|a|G|2434
9T4R|1|a|G|2435
9T4R|1|a|A|2436
9T4R|1|a|A|2437
9T4R|1|a|G|2438

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15