HL_9T4R_100
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9T4R|1|a|G|2776, 9T4R|1|a|C|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T4R_100 not in the Motif Atlas
- Homologous match to HL_7A0S_065
- Geometric discrepancy: 0.2395
- The information below is about HL_7A0S_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.3
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
9T4R|1|a|C|2770
9T4R|1|a|U|2771
9T4R|1|a|G|2772
9T4R|1|a|A|2773
9T4R|1|a|A|2774
9T4R|1|a|A|2775
9T4R|1|a|G|2776
9T4R|1|a|C|2777
9T4R|1|a|A|2778
9T4R|1|a|U|2779
9T4R|1|a|C|2780
9T4R|1|a|U|2781
9T4R|1|a|A|2782
9T4R|1|a|A|2783
9T4R|1|a|G|2784
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain J
- Large ribosomal subunit protein uL13
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: