HL_9T61_029
3D structure
- PDB id
- 9T61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T61_029 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.1951
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9T61|1|A|C|1311
9T61|1|A|U|1312
9T61|1|A|G|1313
9T61|1|A|C|1314
9T61|1|A|A|1315
9T61|1|A|A|1316
9T61|1|A|C|1317
9T61|1|A|U|1318
9T61|1|A|C|1319
9T61|1|A|G|1320
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL31
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: