HL_9TI5_029
3D structure
- PDB id
- 9TI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TI5_029 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.0961
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9TI5|1|A|G|1318
9TI5|1|A|U|1319
9TI5|1|A|G|1320
9TI5|1|A|A|1321
9TI5|1|A|G|1322
9TI5|1|A|A|1323
9TI5|1|A|A|1324
9TI5|1|A|U|1325
9TI5|1|A|C|1326
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain Q
- 50S ribosomal protein L17
- Chain V
- 50S ribosomal protein L22
Coloring options: