HL_9TKR_084

3D structure

PDB id

9TKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S elongation competent complex (70S EC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9TKR|1|D2|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TKR_084 not in the Motif Atlas

Homologous match to HL_8B0X_080

Geometric discrepancy: 0.1854

The information below is about HL_8B0X_080

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9TKR|1|D2|C|2248
9TKR|1|D2|U|2249
9TKR|1|D2|G|2250
9TKR|1|D2|G|2251
9TKR|1|D2|G|2252
9TKR|1|D2|G|2253
9TKR|1|D2|C|2254
9TKR|1|D2|G|2255
9TKR|1|D2|G|2256

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain BP

50S ribosomal protein L16

Chain D5

Transfer RNA; tRNA