HL_9TV2_040

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9TV2|1|L5|A|3862, 9TV2|1|L5|A|3863, 9TV2|1|L5|C|3864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_040 not in the Motif Atlas

Homologous match to HL_9PN5_049

Geometric discrepancy: 0.0416

The information below is about HL_9PN5_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9TV2|1|L5|G|3859
9TV2|1|L5|G|3860
9TV2|1|L5|G|3861
9TV2|1|L5|A|3862
9TV2|1|L5|A|3863
9TV2|1|L5|C|3864
9TV2|1|L5|G|3865
9TV2|1|L5|G|3866
9TV2|1|L5|G|3867
9TV2|1|L5|C|3868

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32