HL_9TZ5_009

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9TZ5|1|a|A|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3607

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9TZ5|1|a|C|309
9TZ5|1|a|U|310
9TZ5|1|a|G|311
9TZ5|1|a|G|312
9TZ5|1|a|A|313
9TZ5|1|a|A|314
9TZ5|1|a|A|315
9TZ5|1|a|G|316

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24