HL_9TZ5_011
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GUGAUAGCC
- Length
- 9 nucleotides
- Bulged bases
- 9TZ5|1|a|G|333, 9TZ5|1|a|A|334, 9TZ5|1|a|U|335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TZ5_011 not in the Motif Atlas
- Homologous match to HL_7A0S_012
- Geometric discrepancy: 0.3775
- The information below is about HL_7A0S_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.5
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 17
Unit IDs
9TZ5|1|a|G|331
9TZ5|1|a|U|332
9TZ5|1|a|G|333
9TZ5|1|a|A|334
9TZ5|1|a|U|335
9TZ5|1|a|A|336
9TZ5|1|a|G|337
9TZ5|1|a|C|338
9TZ5|1|a|C|339
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL24
- Chain w
- Large ribosomal subunit protein uL4
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