HL_9TZ5_013

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9TZ5|1|a|G|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1156

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TZ5|1|a|G|415
9TZ5|1|a|G|416
9TZ5|1|a|A|417
9TZ5|1|a|C|418
9TZ5|1|a|C|419
9TZ5|1|a|A|420
9TZ5|1|a|U|421
9TZ5|1|a|C|422

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15