HL_9TZ5_030

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUGAAAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_030 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1875

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

138

Unit IDs

9TZ5|1|a|G|1291
9TZ5|1|a|U|1292
9TZ5|1|a|G|1293
9TZ5|1|a|A|1294
9TZ5|1|a|A|1295
9TZ5|1|a|A|1296
9TZ5|1|a|A|1297
9TZ5|1|a|A|1298
9TZ5|1|a|C|1299

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL22

Chain m

Large ribosomal subunit protein bL17