HL_9TZ5_031

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9TZ5|1|a|U|1335, 9TZ5|1|a|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_031 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1316

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9TZ5|1|a|G|1334
9TZ5|1|a|U|1335
9TZ5|1|a|U|1336
9TZ5|1|a|A|1337
9TZ5|1|a|A|1338
9TZ5|1|a|U|1339
9TZ5|1|a|C|1340

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL22

Chain m

Large ribosomal subunit protein bL17