HL_9TZ5_054

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_054 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1723

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9TZ5|1|a|U|2340
9TZ5|1|a|G|2341
9TZ5|1|a|C|2342
9TZ5|1|a|A|2343
9TZ5|1|a|A|2344
9TZ5|1|a|A|2345
9TZ5|1|a|G|2346
9TZ5|1|a|G|2347

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL27

Chain s

Large ribosomal subunit protein uL16