HL_9TZ5_058

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

9TZ5|1|a|U|2489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_058 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2303

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9TZ5|1|a|A|2487
9TZ5|1|a|G|2488
9TZ5|1|a|U|2489
9TZ5|1|a|U|2490
9TZ5|1|a|C|2491
9TZ5|1|a|A|2492
9TZ5|1|a|U|2493
9TZ5|1|a|A|2494
9TZ5|1|a|U|2495

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain s

Large ribosomal subunit protein uL16