HL_9TZ5_059

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGUAGCCG

Length

8 nucleotides

Bulged bases

9TZ5|1|a|G|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_059 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1497

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9TZ5|1|a|U|2544
9TZ5|1|a|G|2545
9TZ5|1|a|U|2546
9TZ5|1|a|A|2547
9TZ5|1|a|G|2548
9TZ5|1|a|C|2549
9TZ5|1|a|C|2550
9TZ5|1|a|G|2551

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain g

Large ribosomal subunit protein uL6