HL_9TZE_036

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUUUCGAG

Length

8 nucleotides

Bulged bases

9TZE|1|a|U|145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_036 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.2933

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

9TZE|1|a|C|142
9TZE|1|a|U|143
9TZE|1|a|U|144
9TZE|1|a|U|145
9TZE|1|a|C|146
9TZE|1|a|G|147
9TZE|1|a|A|148
9TZE|1|a|G|149

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23

Chain r

Large ribosomal subunit protein uL29