HL_9UZK_013

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|A|559
9UZK|1|2|C|560
9UZK|1|2|U|561
9UZK|1|2|U|562
9UZK|1|2|U|563
9UZK|1|2|A|564
9UZK|1|2|A|565
9UZK|1|2|A|566
9UZK|1|2|U|567
9UZK|1|2|C|568
9UZK|1|2|C|569
9UZK|1|2|U|570
9UZK|1|2|U|571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24