HL_9UZL_013

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_013 not in the Motif Atlas

Homologous match to HL_9PN5_090

Geometric discrepancy: 0.1999

The information below is about HL_9PN5_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.4

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9UZL|1|2|A|559
9UZL|1|2|C|560
9UZL|1|2|U|561
9UZL|1|2|U|562
9UZL|1|2|U|563
9UZL|1|2|A|564
9UZL|1|2|A|565
9UZL|1|2|A|566
9UZL|1|2|U|567
9UZL|1|2|C|568
9UZL|1|2|C|569
9UZL|1|2|U|570
9UZL|1|2|U|571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24