HL_9UZL_015

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9UZL|1|2|G|817, 9UZL|1|2|U|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_015 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.1655

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9UZL|1|2|U|816
9UZL|1|2|G|817
9UZL|1|2|U|818
9UZL|1|2|U|819
9UZL|1|2|C|820
9UZL|1|2|A|821
9UZL|1|2|A|822
9UZL|1|2|A|823
9UZL|1|2|G|824

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24