HL_9UZL_024

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9UZL|1|2|A|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_024 not in the Motif Atlas

Homologous match to HL_9PN5_101

Geometric discrepancy: 0.1706

The information below is about HL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9UZL|1|2|G|1241
9UZL|1|2|A|1242
9UZL|1|2|C|1243
9UZL|1|2|U|1244
9UZL|1|2|C|1245
9UZL|1|2|A|1246
9UZL|1|2|A|1247
9UZL|1|2|C|1248
9UZL|1|2|A|1249
9UZL|1|2|C|1250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Small ribosomal subunit protein uS9

Chain W

Small ribosomal subunit protein uS10

Chain y

Transfer RNA; tRNA