HL_9UZL_031

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9UZL|1|2|U|1616, 9UZL|1|2|U|1617, 9UZL|1|2|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_031 not in the Motif Atlas

Homologous match to HL_9PN5_108

Geometric discrepancy: 0.1758

The information below is about HL_9PN5_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.3

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

9UZL|1|2|A|1609
9UZL|1|2|U|1610
9UZL|1|2|U|1611
9UZL|1|2|G|1612
9UZL|1|2|C|1613
9UZL|1|2|A|1614
9UZL|1|2|A|1615
9UZL|1|2|U|1616
9UZL|1|2|U|1617
9UZL|1|2|A|1618
9UZL|1|2|U|1619
9UZL|1|2|U|1620

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13

Chain e

Small ribosomal subunit protein uS14