HL_9UZL_032

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9UZL|1|2|G|1660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_032 not in the Motif Atlas

Homologous match to HL_9PN5_109

Geometric discrepancy: 0.3994

The information below is about HL_9PN5_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

4

Unit IDs

9UZL|1|2|G|1653
9UZL|1|2|U|1654
9UZL|1|2|C|1655
9UZL|1|2|A|1656
9UZL|1|2|U|1657
9UZL|1|2|A|1658
9UZL|1|2|A|1659
9UZL|1|2|G|1660
9UZL|1|2|C|1661

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Small ribosomal subunit protein uS9

Chain V

Small ribosomal subunit protein eS19

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14