HL_9UZM_024

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9UZM|1|2|A|1249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZM_024 not in the Motif Atlas

Homologous match to HL_9H3G_099

Geometric discrepancy: 0.54

The information below is about HL_9H3G_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9UZM|1|2|G|1241
9UZM|1|2|A|1242
9UZM|1|2|C|1243
9UZM|1|2|U|1244
9UZM|1|2|C|1245
9UZM|1|2|A|1246
9UZM|1|2|A|1247
9UZM|1|2|C|1248
9UZM|1|2|A|1249
9UZM|1|2|C|1250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS9

Chain W

Small ribosomal subunit protein uS10

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein