HL_9VMA_002

3D structure

PDB id

9VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

a protein complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUUCGU

Length

6 nucleotides

Bulged bases

9VMA|1|G|U|67

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VMA_002 not in the Motif Atlas

Geometric match to HL_8B0X_010

Geometric discrepancy: 0.1937

The information below is about HL_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9VMA|1|G|A|65
9VMA|1|G|U|66
9VMA|1|G|U|67
9VMA|1|G|C|68
9VMA|1|G|G|69
9VMA|1|G|U|70

Current chains

Chain G

RNA (188-MER)

Nearby chains

Chain B

RNA-dependent DNA polymerase

Chain J

RNA (188-MER)