HL_9VTH_011

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

9VTH|1|11|G|341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_011 not in the Motif Atlas

Homologous match to HL_9PN5_084

Geometric discrepancy: 0.0651

The information below is about HL_9PN5_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9VTH|1|11|G|334
9VTH|1|11|A|335
9VTH|1|11|U|336
9VTH|1|11|A|337
9VTH|1|11|G|338
9VTH|1|11|U|339
9VTH|1|11|G|340
9VTH|1|11|G|341
9VTH|1|11|C|342

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S11

Chain ST

40S ribosomal protein S8