HL_9VTH_013
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9VTH|1|11|C|406, 9VTH|1|11|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_013 not in the Motif Atlas
- Homologous match to HL_9PN5_086
- Geometric discrepancy: 0.0786
- The information below is about HL_9PN5_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.4
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|C|397
9VTH|1|11|C|398
9VTH|1|11|U|399
9VTH|1|11|G|400
9VTH|1|11|A|401
9VTH|1|11|G|402
9VTH|1|11|A|403
9VTH|1|11|A|404
9VTH|1|11|A|405
9VTH|1|11|C|406
9VTH|1|11|G|407
9VTH|1|11|G|408
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S4
- Chain SR
- 40S ribosomal protein S6
- Chain ST
- 40S ribosomal protein S8
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