HL_9VTH_015

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGACACG

Length

7 nucleotides

Bulged bases

9VTH|1|11|A|456, 9VTH|1|11|A|458, 9VTH|1|11|C|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_015 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1519

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9VTH|1|11|U|454
9VTH|1|11|G|455
9VTH|1|11|A|456
9VTH|1|11|C|457
9VTH|1|11|A|458
9VTH|1|11|C|459
9VTH|1|11|G|460

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24