HL_9VTH_016

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAUCUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_016 not in the Motif Atlas

Homologous match to HL_9H3G_089

Geometric discrepancy: 0.1464

The information below is about HL_9H3G_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.4

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9VTH|1|11|A|523
9VTH|1|11|A|524
9VTH|1|11|U|525
9VTH|1|11|C|526
9VTH|1|11|U|527
9VTH|1|11|A|528
9VTH|1|11|A|529
9VTH|1|11|A|530
9VTH|1|11|U|531
9VTH|1|11|C|532
9VTH|1|11|C|533
9VTH|1|11|C|534
9VTH|1|11|U|535

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S9-2-like

Chain SZ

40S ribosomal protein S24