HL_9VTH_018

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGCUCAAAG

Length

9 nucleotides

Bulged bases

9VTH|1|11|G|769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_018 not in the Motif Atlas

Homologous match to HL_9H3G_091

Geometric discrepancy: 0.1124

The information below is about HL_9H3G_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9VTH|1|11|U|768
9VTH|1|11|G|769
9VTH|1|11|C|770
9VTH|1|11|U|771
9VTH|1|11|C|772
9VTH|1|11|A|773
9VTH|1|11|A|774
9VTH|1|11|A|775
9VTH|1|11|G|776

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S9-2-like

Chain SQ

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24